Patch Clamp Protocol
Mary Johnson (han at labome dot com)
Synatom Research, Princeton, New Jersey, United States
DOI
//dx.doi.org/10.13070/mm.en.1.190
Date
last modified : 2023-02-19; original version : 2011-09-01
Cite as
MATER METHODS 2011;1:190
Abstract

A detailed step-by-step description of the standard patch clamp protocol and Labome survey results for vibratomes and patch-clamp amplifiers.

Introduction

The patch clamp is a laboratory technique in electrophysiology that allows investigation of the electrical excitability of neurons and the functional properties and densities of ion channels. It is widely used to evaluate the toxicity, especially cardiotoxicity, of potential drugs, for example, [1]. It includes a current clamp and a voltage clamp, and several patch configurations (whole cell, single channel, perforated patch, etc.) varied with respect to membrane integrity, membrane orientation, and continuity between the intracellular space and intrapipette solutions. Here is a standard protocol of blind patch clamp. Automated patch clamp platforms have been developed in recent years [2, 3].

Materials
Reagent Setup

Anesthetics, experimental animals, vibratome, dissection dish, and other tools for dissection and slice handling.

Artificial cerebrospinal fluid (ACSF)

125 mM NaCl, 2.5 mM KCl, 1 mM MgCl2, 2 mM CaCl2, 1.25 mM NaH2PO4, 25 mM NaHCO3 and 25 mM glucose, pH 7.4.
▲ CRITICAL: The osmolarity should be between 305 and 315 mosm. Mix well and bubble in 95% O2–5%CO2.

Microelectrode solution

(For whole-cell recordings: 130 mM KCl, 5 mM NaCl, 0.4 mM CaCl2, 1 mM MgCl2, 10 mM HEPES and 11 mM EGTA, pH 7.3.).
▲ CRITICAL: An osmolarity between 260 and 280 mosm works best. Filter the solution at 0.2 μm and store it at 4°C.

Equipment Setup
Platinum wire U-piece with nylon threads Inverted suction pipette
Syringes Microscope with fiber optic light source
Computer with monitor and software Patch clamp amplifier
Vibration isolation stage Microelectrodes
Microelectrode holder Micromanipulator
Recording chamber Drug application system
Electrode puller (Sutter P-1000 multi-step puller [4] )
Table 1. Patch clamp equipment and sample suppliers. Note: All solutions and equipment coming into contact with cells must be sterile, and proper sterile technique should be used accordingly.
Procedure
  1. Acute brain slices / cultured cells / enzymatically isolated cells should be superfused in ACSF / extracellular solution and continuously gassed with carbogen (5% CO2/95% O2) for at least 2 h at room temperature before recording.
  2. Pull recording microelectrodes to an input resistance of 5–8 MΩ.
    ▲ CRITICAL STEP
  3. Set the bath application system to run at 1–2 ml per minute. Place the slice/cells in.
  4. Fill the recording microelectrode with electrode solution.
  5. If documenting cellular morphology post hoc is desired, include the intracellular dye filling of choice in the micropipette solution. Available dyes include Lucifer yellow, Cell Tracker, biocytin, Alexa biocytin, neurobiotin, etc.
  6. Place the microelectrode in the pipette holder. Apply positive pressure using a 10-ml syringe by displacing the plunger about 1 ml.
    ▲ CRITICAL STEP
  7. Set the amplifier to voltage clamp and apply a test pulse of 5–10 msec and 20 mV amplitude. Slowly approach the area of interest until there is an obvious change in the test pulse amplitude.
  8. Once an obvious and steady change in microelectrode resistance is obtained, release the positive pressure rapidly.
    ▲ CRITICAL STEP
  9. Obtain a GΩ seal spontaneously. If not, briefly apply light suction by mouth until the resistance reaches at least 1 GΩ.
  10. Once a GΩ seal has been formed, proceed to obtain the desired patch-clamp configuration.
    1. Cell-attached configuration: Upon acquiring a GΩ seal one can proceed with the experiment. In this configuration, the microelectrode solution should resemble the extracellular medium.
    2. Inside-out configuration: After obtaining a GΩ seal, slowly pull the pipette away from the cell. Eventually, a small piece of cell membrane will be detached from the cell surface without losing the GΩ seal. The microelectrode solution should resemble the extracellular medium in this configuration also.
    3. Whole-cell configuration:
      1. In this configuration, the microelectrode solution should approximate intracellular ionic composition.
      2. To record in whole-cell mode, change the voltage clamp to a negative voltage close to the cell resting potential (–60 mV for radial glial cells) and correct for fast capacitance. Apply continuous light suction by mouth until the membrane breaks as evidenced by a change in the capacitance and the test pulse current. ▲ CRITICAL STEP
      3. If doing perforated patch recordings, front-fill the microelectrode with electrode solution without antibiotic, back-fill with electrode solution containing antibiotic. After a GΩ seal is obtained, simply set the voltage clamp near the resting potential and wait for the resistance to slowly decrease and stabilize.
    4. Outside-out configuration: After obtaining a whole-cell recording, very slowly withdraw the pipette until resistance increases greatly, indicating the formation of an excised membrane ‘bleb.’
  11. Analyze recordings. Most acquisition software comes bundled with analysis software.
SupplierNumSample References
Leica 16 VT1200 [5, 6]
Thermo Fisher 1 HM650V [7]
Ted Pella 1 Vibratome 3000 [8]
Table 2. Major suppliers of vibratomes.
Vibratomes and patch clamp amplifiers in the literature

Labome surveys formal publications for reagents and instruments. Table 2 lists the suppliers of vibratomes cited in the formal publications indicating vibratomes. Table 3 lists the major suppliers of patch clamp amplifiers from the surveyed publications. Patch clamp amplifiers like Axopatch 200B are also used in nanopore experiments [9]. For example, Yang J et al recorded the whole-cell currents in HEK293 cells with MultiClamp 700B amplifier and 1550B digitizer from Molecular Devices [4]. Gong J et al recorded glutamate-gated currents of wild-type and various variants of mouse GluK2 as well as GLR-3 expressed in CHO cells a Multiclamp 700B amplifier [10].

SupplierMain modelNumSample References
Molecular Devices / Axon Instruments MultiClamp 700B [5, 11], AxoPatch 200B [12, 13], Digidata 1322A, Digidata 1440A 49 [6, 11]
Heka Elektronik EPC-10, EPC-9/2 10 [1, 14]
Warner 2 [15]
Table 3. Major suppliers of patch clamp amplifiers in the publications. Suppliers such as Hugo Sachs Elektroniks, Piezosystem Jena, A-M Systems, Neuralynx and others have one citation each.
Troubleshooting
I cannot obtain GΩ seals
  1. Make sure your preparation is healthy and has always been oxygenated; check the pH and osmolarity of your ACSF and filling solution.
  2. Make sure you are placing the electrode in an area of high cell density.
  3. Check the shape of your microelectrode tip. Keep the resistance in the right range (4–6 MΩ for mature neurons, 8–12 MΩ for small cells).
  4. Check the pressure line to the microelectrode holder for leaks.
  5. Clean the microcapillaries and make sure that you are not contaminating them with oils while handling.
obtain a GΩ seal but cannot “break in” because I lose the seal when trying
  1. Check the pressure line to the microelectrode holder for leaks or obstructions.
  2. Try the “zap” function in your amplifier.
  3. Try a different microelectrode. Lowering the resistance may help.
My seals do not last very long
  1. Once in whole-cell mode, apply light positive pressure.
  2. Check the shape of your microelectrode tip.
  3. Make sure your preparation is healthy.
  4. Check the osmolarity of the solutions.
  5. Make sure the ACSF bath and drug application system does not have air bubbles> Make sure no vibration of the stage or microelectrode holder.
I am not sure whether I am patching the right cell type
  1. Make sure your preparation is healthy.
  2. Be familiar with the basic electrical properties of your cell of interest.
  3. Include a dye to track cell morphology post hoc.
I am not sure whether my preparation is healthy
  1. Perform a rapid cell-death and survival assay using representative preparations and the fluorescent markers propidium iodide (dead cells) and Syto-11 (live cells).
Does the age of the animal matter?

Yes. up to P12, it is durable. After P12, it becomes increasingly difficult.

My electrode measures 7MΩ in the saline, but as soon as I exert pressure, it goes up to 15MΩ. Should I patch?

No. Your solution contains dust which clogs the tip of the electrode. If this happens 3 times repeatedly, refilter your pipette solution.

My electrode is >50MΩ with visible capacitance!! help!

You have bubbles in the tip of your pipette. Take the pipette out and give it a few taps.

Does penetration angle matter?

Probably Yes. In general, 45 degree or shallower makes better giga seals.

I always get dendrites, but my boss needs somatic recording.

Make a bigger patch electrode (e.g., 4-6MΩ) and start deeper in the brain (say, layer 2/3).

What is the ideal tip resistance?

It depends, but just to patch and establish current clamp recording, 5MΩ is probably the choice. Smaller (i.e., higher resistance) is slightly easier to form a seal, but more difficult to break in, and the access resistance will be bigger. Bigger (i.e., lower resistance) will get you to soma and probably good voltage clamp, but seal formation will be more difficult. I’ve never managed to make a seal with electrodes smaller than 3MΩ.

How do I chloride my silver electrode?

Put it in bleach for 15 – 30 min.

Electrolysis in saline (150 – 300 mM NaCl) with 5 – 10V.

Voltage shows slow DC shift, especially when I turn on step command. What should I do?

It is likely that your electrode (either reference or electrode) is not chrolided. (i.e., silver is exposed, instead of AgCl, or silver is somehow oxidized). Put the silver wires in bleach for 15 min or so.

I cannot exert pressure / suction. Why?

Check your Tee junction.

How much biocytin should I put in my internal solution?

Again, the answer is that it depends. Usually, 0.5% to 2% (w/v) is more than enough. Mind the osmolality. It should be around 290-310.

References
  1. Cameron L, Tombari R, Lu J, Pell A, Hurley Z, Ehinger Y, et al. A non-hallucinogenic psychedelic analogue with therapeutic potential. Nature. 2021;589:474-479 pubmed publisher
  2. Obergrussberger A, Goetze T, Brinkwirth N, Becker N, Friis S, Rapedius M, et al. An update on the advancing high-throughput screening techniques for patch clamp-based ion channel screens: implications for drug discovery. Expert Opin Drug Discov. 2018;13:269-277 pubmed publisher
  3. Bell D, Dallas M. Using automated patch clamp electrophysiology platforms in pain-related ion channel research: insights from industry and academia. Br J Pharmacol. 2018;175:2312-2321 pubmed publisher
  4. Yang J, Chen J, Del Carmen Vitery M, Osei Owusu J, Chu J, Yu H, et al. PAC, an evolutionarily conserved membrane protein, is a proton-activated chloride channel. Science. 2019;364:395-399 pubmed publisher
  5. Tsai N, Wang F, Toma K, Yin C, Takatoh J, Pai E, et al. Trans-Seq maps a selective mammalian retinotectal synapse instructed by Nephronectin. Nat Neurosci. 2022;25:659-674 pubmed publisher
  6. Spix T, Nanivadekar S, Toong N, Kaplow I, Isett B, Goksen Y, et al. Population-specific neuromodulation prolongs therapeutic benefits of deep brain stimulation. Science. 2021;374:201-206 pubmed publisher
  7. Yan J, Bengtson C, Buchthal B, Hagenston A, Bading H. Coupling of NMDA receptors and TRPM4 guides discovery of unconventional neuroprotectants. Science. 2020;370: pubmed publisher
  8. Szonyi A, Sos K, Nyilas R, Schlingloff D, Domonkos A, Takács V, et al. Brainstem nucleus incertus controls contextual memory formation. Science. 2019;364: pubmed publisher
  9. Brinkerhoff H, Kang A, Liu J, Aksimentiev A, Dekker C. Multiple rereads of single proteins at single-amino acid resolution using nanopores. Science. 2021;:eabl4381 pubmed publisher
  10. Gong J, Liu J, Ronan E, He F, Cai W, Fatima M, et al. A Cold-Sensing Receptor Encoded by a Glutamate Receptor Gene. Cell. 2019;178:1375-1386.e11 pubmed publisher
  11. Tansley S, Gu N, Guzmán A, Cai W, Wong C, Lister K, et al. Microglia-mediated degradation of perineuronal nets promotes pain. Science. 2022;:eabl6773 pubmed publisher
  12. Qian H, Kang X, Hu J, Zhang D, Liang Z, Meng F, et al. Reversing a model of Parkinson's disease with in situ converted nigral neurons. Nature. 2020;582:550-556 pubmed publisher
  13. Guo A, Wang Y, Chen B, Wang Y, Yuan J, Zhang L, et al. E-C coupling structural protein junctophilin-2 encodes a stress-adaptive transcription regulator. Science. 2018;362: pubmed publisher
  14. Barker S, Raju R, Milman N, Wang J, Davila Velderrain J, Gunter Rahman F, et al. MEF2 is a key regulator of cognitive potential and confers resilience to neurodegeneration. Sci Transl Med. 2021;13:eabd7695 pubmed publisher
  15. Ramu Y, Xu Y, Shin H, Lu Z. Counteracting suppression of CFTR and voltage-gated K+ channels by a bacterial pathogenic factor with the natural product tannic acid. elife. 2014;3:e03683 pubmed publisher
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