| Reference | 
|---|
| Fan H, Wu Q, Wei F, Yang F, Ng B, Hu Y. Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution. Genome Biol. 2019;20:267 pubmed  publisher | 
| Jin J, Xu H, Wu R, Gao N, Wu N, Li S, et al . Identification of key genes and pathways associated with different immune statuses of hepatitis B virus infection. J Cell Mol Med. 2019;23:7474-7489 pubmed  publisher | 
| Juskevicius D, Jucker D, Dietsche T, Perrina V, Rufle A, Ruiz C, et al . Novel cell enrichment technique for robust genetic analysis of archival classical Hodgkin lymphoma tissues. Lab Invest. 2018;98:1487-1499 pubmed  publisher | 
| Korabecna M, Geryk J, Hora M, Steiner P, Seda O, Tesar V. Genome-wide methylation analysis of tubulocystic and papillary renal cell carcinomas. Neoplasma. 2016;63:402-10 pubmed  publisher | 
| Jung K, Wang P, Gupta N, Gopal K, Wu F, Ye X, et al . Profiling gene promoter occupancy of Sox2 in two phenotypically distinct breast cancer cell subsets using chromatin immunoprecipitation and genome-wide promoter microarrays. Breast Cancer Res. 2014;16:470 pubmed  publisher | 
| Abe H, Ogawa T, Wang L, Kimura M, Tanaka T, Morita R, et al . Promoter-region hypermethylation and expression downregulation of Yy1 (Yin yang 1) in preneoplastic liver lesions in a thioacetamide rat hepatocarcinogenesis model. Toxicol Appl Pharmacol. 2014;280:467-74 pubmed  publisher | 
| Pradeepa M, Grimes G, Taylor G, Sutherland H, Bickmore W. Psip1/Ledgf p75 restrains Hox gene expression by recruiting both trithorax and polycomb group proteins. Nucleic Acids Res. 2014;42:9021-32 pubmed  publisher | 
| Dhimolea E, Wadia P, Murray T, Settles M, Treitman J, Sonnenschein C, et al . Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development. PLoS ONE. 2014;9:e99800 pubmed  publisher | 
| VanderWeele D, Brown C, Taxy J, Gillard M, Hatcher D, Tom W, et al . Low-grade prostate cancer diverges early from high grade and metastatic disease. Cancer Sci. 2014;105:1079-85 pubmed  publisher | 
| Olsvik P, Williams T, Tung H, Mirbahai L, Sanden M, Skjaerven K, et al . Impacts of TCDD and MeHg on DNA methylation in zebrafish (Danio rerio) across two generations. Comp Biochem Physiol C Toxicol Pharmacol. 2014;165:17-27 pubmed  publisher | 
| Girardot M, Pecquet C, Chachoua I, Van Hees J, Guibert S, Ferrant A, et al . Persistent STAT5 activation in myeloid neoplasms recruits p53 into gene regulation. Oncogene. 2015;34:1323-32 pubmed  publisher | 
| Chapman V, Zollinger T, Terranova R, Moggs J, Kimber I, Dearman R. Chemical allergen induced perturbations of the mouse lymph node DNA methylome. Toxicol Sci. 2014;139:350-61 pubmed  publisher | 
| Itzhak Y, Ergui I, Young J. Long-term parental methamphetamine exposure of mice influences behavior and hippocampal DNA methylation of the offspring. Mol Psychiatry. 2015;20:232-9 pubmed  publisher | 
| Gribble S, Wiseman F, Clayton S, Prigmore E, Langley E, Yang F, et al . Massively parallel sequencing reveals the complex structure of an irradiated human chromosome on a mouse background in the Tc1 model of Down syndrome. PLoS ONE. 2013;8:e60482 pubmed  publisher | 
| von Teichman A, Storz M, Dettwiler S, Moch H, Schraml P. Whole genome and transcriptome amplification: practicable tools for sustainable tissue biobanking?. Virchows Arch. 2012;461:571-80 pubmed  publisher | 
| Duc T, Hassanzadeh Ghassabeh G, Saerens D, Peeters E, Charlier D, Muyldermans S. Nanobody-based chromatin immunoprecipitation. Methods Mol Biol. 2012;911:491-505 pubmed  publisher | 
| Selmi C, Feghali Bostwick C, Lleo A, Lombardi S, De Santis M, Cavaciocchi F, et al . X chromosome gene methylation in peripheral lymphocytes from monozygotic twins discordant for scleroderma. Clin Exp Immunol. 2012;169:253-62 pubmed  publisher | 
| Zhang J, Markus J, Bies J, Paul T, Wolff L. Three murine leukemia virus integration regions within 100 kilobases upstream of c-myb are proximal to the 5' regulatory region of the gene through DNA looping. J Virol. 2012;86:10524-32 pubmed  publisher | 
| Kawanabe T, Fujimoto R, Sasaki T, Taylor J, Dennis E. A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis. Gene. 2012;506:301-9 pubmed  publisher | 
| Chen Z, Liu Z, Deng X, Warden C, Li W, Garcia Aguilar J. Chromosomal copy number alterations are associated with persistent lymph node metastasis after chemoradiation in locally advanced rectal cancer. Dis Colon Rectum. 2012;55:677-85 pubmed  publisher | 
| Thiaville M, Stoeck A, Chen L, Wu R, Magnani L, Oidtman J, et al . Identification of PBX1 target genes in cancer cells by global mapping of PBX1 binding sites. PLoS ONE. 2012;7:e36054 pubmed  publisher | 
| Lickwar C, Mueller F, Hanlon S, McNally J, Lieb J. Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature. 2012;484:251-5 pubmed  publisher | 
| Ueberham U, Hilbrich I, Ueberham E, Rohn S, Glöckner P, Dietrich K, et al . Transcriptional control of cell cycle-dependent kinase 4 by Smad proteins--implications for Alzheimer's disease. Neurobiol Aging. 2012;33:2827-40 pubmed  publisher | 
| Chen X, Thiaville M, Chen L, Stoeck A, Xuan J, Gao M, et al . Defining NOTCH3 target genes in ovarian cancer. Cancer Res. 2012;72:2294-303 pubmed  publisher | 
| Aberg K, Khachane A, Rudolf G, Nerella S, Fugman D, Tischfield J, et al . Methylome-wide comparison of human genomic DNA extracted from whole blood and from EBV-transformed lymphocyte cell lines. Eur J Hum Genet. 2012;20:953-5 pubmed  publisher | 
| Vetro A, Manolakos E, Petersen M, Thomaidis L, Liehr T, Croci G, et al . Unexpected results in the constitution of small supernumerary marker chromosomes. Eur J Med Genet. 2012;55:185-90 pubmed  publisher | 
| Murchison E, Schulz Trieglaff O, Ning Z, Alexandrov L, Bauer M, Fu B, et al . Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer. Cell. 2012;148:780-91 pubmed  publisher | 
| Chen T, Williams T, Mally A, Hamberger C, Mirbahai L, Hickling K, et al . Gene expression and epigenetic changes by furan in rat liver. Toxicology. 2012;292:63-70 pubmed  publisher | 
| Rajeev L, Luning E, Dehal P, Price M, Arkin A, Mukhopadhyay A. Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium. Genome Biol. 2011;12:R99 pubmed  publisher | 
| Yip W, Cheng A, Zhu R, Lung R, Tsang D, Lau S, et al . Carboxyl-terminal truncated HBx regulates a distinct microRNA transcription program in hepatocellular carcinoma development. PLoS ONE. 2011;6:e22888 pubmed  publisher | 
| Kitada K, Taima A, Ogasawara K, Metsugi S, Aikawa S. Chromosome-specific segmentation revealed by structural analysis of individually isolated chromosomes. Genes Chromosomes Cancer. 2011;50:217-27 pubmed  publisher | 
| Frietze S, O Geen H, Blahnik K, Jin V, Farnham P. ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes. PLoS ONE. 2010;5:e15082 pubmed  publisher | 
| Suzuki K, Takigawa W, Tanigawa K, Nakamura K, Ishido Y, Kawashima A, et al . Detection of Mycobacterium leprae DNA from archaeological skeletal remains in Japan using whole genome amplification and polymerase chain reaction. PLoS ONE. 2010;5:e12422 pubmed  publisher | 
| Yant L, Mathieu J, Dinh T, Ott F, Lanz C, Wollmann H, et al . Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell. 2010;22:2156-70 pubmed  publisher | 
| Zhao Z, Andersen S, Ljung K, Dolezal K, Miotk A, Schultheiss S, et al . Hormonal control of the shoot stem-cell niche. Nature. 2010;465:1089-92 pubmed  publisher | 
| Vastenhouw N, Zhang Y, Woods I, Imam F, Regev A, Liu X, et al . Chromatin signature of embryonic pluripotency is established during genome activation. Nature. 2010;464:922-6 pubmed  publisher | 
| Karnani N, Taylor C, Malhotra A, Dutta A. Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection. Mol Biol Cell. 2010;21:393-404 pubmed  publisher | 
| Hu Y, Fong S, Ferrell C, Largman C, Shen W. HOXA9 modulates its oncogenic partner Meis1 to influence normal hematopoiesis. Mol Cell Biol. 2009;29:5181-92 pubmed  publisher | 
| Jiang N, Emberly E, Cuvier O, Hart C. Genome-wide mapping of boundary element-associated factor (BEAF) binding sites in Drosophila melanogaster links BEAF to transcription. Mol Cell Biol. 2009;29:3556-68 pubmed  publisher | 
| Dahl J, Reiner A, Collas P. Fast genomic muChIP-chip from 1,000 cells. Genome Biol. 2009;10:R13 pubmed  publisher | 
| Mead S, Poulter M, Beck J, Uphill J, Jones C, Ang C, et al . Successful amplification of degraded DNA for use with high-throughput SNP genotyping platforms. Hum Mutat. 2008;29:1452-8 pubmed  publisher | 
| Acevedo L, Iniguez A, Holster H, Zhang X, Green R, Farnham P. Genome-scale ChIP-chip analysis using 10,000 human cells. Biotechniques. 2007;43:791-7 pubmed | 
| Barker D, Hansen M, Faruqi A, Giannola D, Irsula O, Lasken R, et al . Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel. Genome Res. 2004;14:901-7 pubmed | 
| Gribble S, Ng B, Prigmore E, Burford D, Carter N. Chromosome paints from single copies of chromosomes. Chromosome Res. 2004;12:143-51 pubmed | 
| Thorstenson Y, Hunicke Smith S, Oefner P, Davis R. An automated hydrodynamic process for controlled, unbiased DNA shearing. Genome Res. 1998;8:848-55 pubmed |