Reference |
---|
Murawska M, Schauer T, Matsuda A, Wilson M, Pysik T, Wojcik F, et al. The Chaperone FACT and Histone H2B Ubiquitination Maintain S. pombe Genome Architecture through Genic and Subtelomeric Functions. Mol Cell. 2020;77:501-513.e7 pubmed publisher
|
Fingerhut L, Ohnesorge B, von Borstel M, Schumski A, Strutzberg Minder K, Morgelin M, et al. Neutrophil Extracellular Traps in the Pathogenesis of Equine Recurrent Uveitis (ERU). Cells. 2019;8: pubmed publisher
|
Donovan B, Huynh A, Ball D, Patel H, Poirier M, Larson D, et al. Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting. EMBO J. 2019;38: pubmed publisher
|
Rao R, Ketkar A, Kedia N, Krishnamoorthy V, Lakshmanan V, Kumar P, et al. KMT1 family methyltransferases regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation. EMBO Rep. 2019;20: pubmed publisher
|
Saleh R, Dilg D, Abou Zeid A, Hashad D, Scambler P, Chapgier A. HIRA directly targets the enhancers of selected cardiac transcription factors during in vitro differentiation of mouse embryonic stem cells. Mol Biol Rep. 2018;45:1001-1011 pubmed publisher
|
Li H, Yao Q, Mariscal A, Wu X, Hulse J, Pedersen E, et al. Epigenetic control of IL-23 expression in keratinocytes is important for chronic skin inflammation. Nat Commun. 2018;9:1420 pubmed publisher
|
Manterola M, Brown T, Oh M, Garyn C, Gonzalez B, Wolgemuth D. BRDT is an essential epigenetic regulator for proper chromatin organization, silencing of sex chromosomes and crossover formation in male meiosis. PLoS Genet. 2018;14:e1007209 pubmed publisher
|
Truong D, Boeke J. Resetting the Yeast Epigenome with Human Nucleosomes. Cell. 2017;171:1508-1519.e13 pubmed publisher
|
Zou B, Sun Q, Zhang W, DING Y, Yang D, Shi Z, et al. The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy. Plant Cell Physiol. 2017;58:2202-2216 pubmed publisher
|
Zhao H, Zhu X, Wang K, Gent J, Zhang W, Dawe R, et al. Gene Expression and Chromatin Modifications Associated with Maize Centromeres. G3 (Bethesda). 2015;6:183-92 pubmed publisher
|
Kocyłowski M, Rey A, Stewart G, Halazonetis T. Ubiquitin-H2AX fusions render 53BP1 recruitment to DNA damage sites independent of RNF8 or RNF168. Cell Cycle. 2015;14:1748-58 pubmed publisher
|
Thomas C, Kotova E, Andrake M, Adolf Bryfogle J, Glaser R, Regnard C, et al. Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation. Mol Cell. 2014;53:831-42 pubmed publisher
|
Hernandez F, Huang L, Olson M, Powers K, Hernandez L, Meyerholz D, et al. Noninvasive imaging of Staphylococcus aureus infections with a nuclease-activated probe. Nat Med. 2014;20:301-6 pubmed publisher
|
Douglas K, Wang X, Jasti M, Wolff A, Vandeberg J, Clark A, et al. Genome-wide histone state profiling of fibroblasts from the opossum, Monodelphis domestica, identifies the first marsupial-specific imprinted gene. BMC Genomics. 2014;15:89 pubmed publisher
|
Zhang T, Talbert P, Zhang W, Wu Y, Yang Z, Henikoff J, et al. The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres. Proc Natl Acad Sci U S A. 2013;110:E4875-83 pubmed publisher
|
Ichikawa Y, Morohashi N, Nishimura Y, Kurumizaka H, Shimizu M. Telomeric repeats act as nucleosome-disfavouring sequences in vivo. Nucleic Acids Res. 2014;42:1541-52 pubmed publisher
|
Krajewski W. Comparison of the Isw1a, Isw1b, and Isw2 nucleosome disrupting activities. Biochemistry. 2013;52:6940-9 pubmed publisher
|
Shebzukhov Y, Horn K, Brazhnik K, Drutskaya M, Kuchmiy A, Kuprash D, et al. Dynamic changes in chromatin conformation at the TNF transcription start site in T helper lymphocyte subsets. Eur J Immunol. 2014;44:251-64 pubmed publisher
|
Roche J, Dellarole M, Caro J, Norberto D, Garcia A, Garcia Moreno B, et al. Effect of internal cavities on folding rates and routes revealed by real-time pressure-jump NMR spectroscopy. J Am Chem Soc. 2013;135:14610-8 pubmed publisher
|
Mizukami T, Xu M, Cheng H, Roder H, Maki K. Nonuniform chain collapse during early stages of staphylococcal nuclease folding detected by fluorescence resonance energy transfer and ultrarapid mixing methods. Protein Sci. 2013;22:1336-48 pubmed publisher
|
Spencer D, Bertrand G, Stites W. The pH dependence of staphylococcal nuclease stability is incompatible with a three-state denaturation model. Biophys Chem. 2013;180-181:86-94 pubmed publisher
|
Tang J, Chen J, Li H, Zeng P, Li J. Characterization of adhesin genes, staphylococcal nuclease, hemolysis, and biofilm formation among Staphylococcus aureus strains isolated from different sources. Foodborne Pathog Dis. 2013;10:757-63 pubmed publisher
|
Dellarole M, Kobayashi K, Rouget J, Caro J, Roche J, Islam M, et al. Probing the physical determinants of thermal expansion of folded proteins. J Phys Chem B. 2013;117:12742-9 pubmed publisher
|
González Prieto R, Muñoz Cabello A, Cabello Lobato M, Prado F. Rad51 replication fork recruitment is required for DNA damage tolerance. EMBO J. 2013;32:1307-21 pubmed publisher
|
Armstrong A, Hildreth J, Amzel L. Structural and thermodynamic insights into the recognition of native proteins by anti-peptide antibodies. J Mol Biol. 2013;425:2027-2038 pubmed publisher
|
Nikitina T, Wang D, Gomberg M, Grigoryev S, Zhurkin V. Combined micrococcal nuclease and exonuclease III digestion reveals precise positions of the nucleosome core/linker junctions: implications for high-resolution nucleosome mapping. J Mol Biol. 2013;425:1946-1960 pubmed publisher
|
Xie T, Feng Y, Shan L, Wang J. Modeling of the [E43S]SNase-ssDNA-Cd(2+) complex: structural insight into the action of nuclease on ssDNA. Arch Biochem Biophys. 2013;532:103-13 pubmed publisher
|
Olson M, Nygaard T, Ackermann L, Watkins R, Zurek O, Pallister K, et al. Staphylococcus aureus nuclease is an SaeRS-dependent virulence factor. Infect Immun. 2013;81:1316-24 pubmed publisher
|
Phetrungnapha A, Panyim S, Ongvarrasopone C. Penaeus monodon Tudor staphylococcal nuclease preferentially interacts with N-terminal domain of Argonaute-1. Fish Shellfish Immunol. 2013;34:875-84 pubmed publisher
|
Rodriguez J, Tsukiyama T. ATR-like kinase Mec1 facilitates both chromatin accessibility at DNA replication forks and replication fork progression during replication stress. Genes Dev. 2013;27:74-86 pubmed publisher
|
Redel H, Gao Z, Li H, Alekseyenko A, Zhou Y, Perez Perez G, et al. Quantitation and composition of cutaneous microbiota in diabetic and nondiabetic men. J Infect Dis. 2013;207:1105-14 pubmed publisher
|
Hu Y, Meng J, Shi C, Hervin K, Fratamico P, Shi X. Characterization and comparative analysis of a second thermonuclease from Staphylococcus aureus. Microbiol Res. 2013;168:174-82 pubmed publisher
|
Tunsjø H, Follin Arbelet B, Clausen N, Ness Y, Leegaard T, Bemanian V. A rapid, high-throughput screening method for carriage of methicillin-resistant Staphylococcus aureus. APMIS. 2013;121:865-70 pubmed publisher
|
de Vries S, Naarmann de Vries I, Urlaub H, Lue H, Bernhagen J, Ostareck D, et al. Identification of DEAD-box RNA helicase 6 (DDX6) as a cellular modulator of vascular endothelial growth factor expression under hypoxia. J Biol Chem. 2013;288:5815-27 pubmed publisher
|
Kim B, Park J, Song C, Kim J, Lim H, Lee H, et al. Clarifying the transmission route of Staphylococcus aureus colonizing the skin in early childhood atopic dermatitis. Ann Allergy Asthma Immunol. 2012;109:448-53 pubmed publisher
|
Gaffney D, McVicker G, Pai A, Fondufe Mittendorf Y, Lewellen N, Michelini K, et al. Controls of nucleosome positioning in the human genome. PLoS Genet. 2012;8:e1003036 pubmed publisher
|
Lee K, Lau Z, Meredith C, Park J. Decrease of p400 ATPase complex and loss of H2A.Z within the p21 promoter occur in senescent IMR-90 human fibroblasts. Mech Ageing Dev. 2012;133:686-94 pubmed publisher
|
Rosenberg Goldstein R, Micallef S, Gibbs S, Davis J, He X, George A, et al. Methicillin-resistant Staphylococcus aureus (MRSA) detected at four U.S. wastewater treatment plants. Environ Health Perspect. 2012;120:1551-8 pubmed publisher
|
Ng D, Sarkar C. Engineering signal peptides for enhanced protein secretion from Lactococcus lactis. Appl Environ Microbiol. 2013;79:347-56 pubmed publisher
|
Roche J, Dellarole M, Caro J, Guca E, Norberto D, Yang Y, et al. Remodeling of the folding free energy landscape of staphylococcal nuclease by cavity-creating mutations. Biochemistry. 2012;51:9535-46 pubmed publisher
|
Molla B, Byrne M, Abley M, Mathews J, Jackson C, Fedorka Cray P, et al. Epidemiology and genotypic characteristics of methicillin-resistant Staphylococcus aureus strains of porcine origin. J Clin Microbiol. 2012;50:3687-93 pubmed publisher
|
Milla M, Daban J. Self-assembly of thin plates from micrococcal nuclease-digested chromatin of metaphase chromosomes. Biophys J. 2012;103:567-75 pubmed publisher
|
Pogany J, Nagy P. p33-Independent activation of a truncated p92 RNA-dependent RNA polymerase of Tomato bushy stunt virus in yeast cell-free extract. J Virol. 2012;86:12025-38 pubmed publisher
|
Wei G, Hu G, Cui K, Zhao K. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology. Methods Enzymol. 2012;513:297-313 pubmed publisher
|
Wal M, Pugh B. Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq. Methods Enzymol. 2012;513:233-50 pubmed publisher
|
Krietenstein N, Wippo C, Lieleg C, Korber P. Genome-wide in vitro reconstitution of yeast chromatin with in vivo-like nucleosome positioning. Methods Enzymol. 2012;513:205-32 pubmed publisher
|
Cole H, Howard B, Clark D. Genome-wide mapping of nucleosomes in yeast using paired-end sequencing. Methods Enzymol. 2012;513:145-68 pubmed publisher
|
Ohmayer U, Pérez Fernández J, Hierlmeier T, Pöll G, Williams L, Griesenbeck J, et al. Local tertiary structure probing of ribonucleoprotein particles by nuclease fusion proteins. PLoS ONE. 2012;7:e42449 pubmed publisher
|
Chen Y, Wang L, Jiang W. Micrococcal nuclease detection based on peptide-bridged energy transfer between quantum dots and dye-labeled DNA. Talanta. 2012;97:533-8 pubmed publisher
|
Majumder P, Dasgupta D. Effect of DNA groove binder distamycin A upon chromatin structure. PLoS ONE. 2011;6:e26486 pubmed publisher
|
Celona B, Weiner A, Di Felice F, Mancuso F, Cesarini E, Rossi R, et al. Substantial histone reduction modulates genomewide nucleosomal occupancy and global transcriptional output. PLoS Biol. 2011;9:e1001086 pubmed publisher
|
Lorch Y, Griesenbeck J, Boeger H, Maier Davis B, Kornberg R. Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex. Nat Struct Mol Biol. 2011;18:881-5 pubmed publisher
|
Chung H, Dunkel I, Heise F, Linke C, Krobitsch S, Ehrenhofer Murray A, et al. The effect of micrococcal nuclease digestion on nucleosome positioning data. PLoS ONE. 2010;5:e15754 pubmed publisher
|
Shipp L, Lee J, Yu C, Pufall M, Zhang P, Scott D, et al. Transcriptional regulation of human dual specificity protein phosphatase 1 (DUSP1) gene by glucocorticoids. PLoS ONE. 2010;5:e13754 pubmed publisher
|
Bendaly J, Doll M, Millner L, Metry K, Smith N, Pierce W, et al. Differences between human slow N-acetyltransferase 2 alleles in levels of 4-aminobiphenyl-induced DNA adducts and mutations. Mutat Res. 2009;671:13-9 pubmed publisher
|
Zhu X, Gustafsson C. Distinct differences in chromatin structure at subtelomeric X and Y' elements in budding yeast. PLoS ONE. 2009;4:e6363 pubmed publisher
|
Zawadzki K, Morozov A, Broach J. Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae. Mol Biol Cell. 2009;20:3503-13 pubmed publisher
|
Brand M, Rampalli S, Chaturvedi C, Dilworth F. Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography. Nat Protoc. 2008;3:398-409 pubmed publisher
|
Sivasubramaniam S, Sun X, Pan Y, Wang S, Lee E. Cep164 is a mediator protein required for the maintenance of genomic stability through modulation of MDC1, RPA, and CHK1. Genes Dev. 2008;22:587-600 pubmed publisher
|
Gilfillan S, Stelzer G, Piaia E, Hofmann M, Meisterernst M. Efficient binding of NC2.TATA-binding protein to DNA in the absence of TATA. J Biol Chem. 2005;280:6222-30 pubmed
|
Lee D, Hwang S, Kim J, Choe J. Functional interaction between p/CAF and human papillomavirus E2 protein. J Biol Chem. 2002;277:6483-9 pubmed
|
Sulkowski E, Laskowski M. Phosphatase-free crystalline micrococcal nuclease. J Biol Chem. 1966;241:4386-8 pubmed
|
Kacian D, Spiegelman S. Use of micrococcal nuclease to monitor hybridization reactions with DNA. Anal Biochem. 1974;58:534-40 pubmed
|