| Published Application/Species/Sample/Dilution | Reference |
|---|
- ChIP-Seq; human; 1:88; loading ...; fig 5f
| Tsujimura T, Takase O, Yoshikawa M, Sano E, Hayashi M, Hoshi K, et al. Controlling gene activation by enhancers through a drug-inducible topological insulator. elife. 2020;9: pubmed publisher |
- chromatin immunoprecipitation; mouse; loading ...; fig e1g
| Zhang H, Emerson D, Gilgenast T, Titus K, Lan Y, Huang P, et al. Chromatin structure dynamics during the mitosis-to-G1 phase transition. Nature. 2019;576:158-162 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig 5a
| Zhang S, Deng T, Tang W, He B, Furusawa T, Ambs S, et al. Epigenetic regulation of REX1 expression and chromatin binding specificity by HMGNs. Nucleic Acids Res. 2019;47:4449-4461 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig e6j
| MONAHAN K, HORTA A, Lomvardas S. LHX2- and LDB1-mediated trans interactions regulate olfactory receptor choice. Nature. 2019;565:448-453 pubmed publisher |
- chromatin immunoprecipitation; human; loading ...; fig 2f
| Rubin A, Barajas B, Furlan Magaril M, Lopez Pajares V, Mumbach M, Howard I, et al. Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation. Nat Genet. 2017;49:1522-1528 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig 1c
| Busslinger G, Stocsits R, van der Lelij P, Axelsson E, Tedeschi A, Galjart N, et al. Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl. Nature. 2017;544:503-507 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig 1
| Lee H, Willi M, Wang C, Yang C, Smith H, Liu C, et al. Functional assessment of CTCF sites at cytokine-sensing mammary enhancers using CRISPR/Cas9 gene editing in mice. Nucleic Acids Res. 2017;45:4606-4618 pubmed publisher |
- EMSA; human; loading ...; fig 5d
| Hu T, Zhu X, Pi W, Yu M, Shi H, Tuan D. Hypermethylated LTR retrotransposon exhibits enhancer activity. Epigenetics. 2017;12:226-237 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig 5a
| Wu H, Gordon J, Whitfield T, Tai P, Van Wijnen A, Stein J, et al. Chromatin dynamics regulate mesenchymal stem cell lineage specification and differentiation to osteogenesis. Biochim Biophys Acta Gene Regul Mech. 2017;1860:438-449 pubmed publisher |
- ChIP-Seq; mouse; loading ...; fig 7a
- chromatin immunoprecipitation; human; loading ...; fig s7a
| Herzig Y, Nevo S, Bornstein C, Brezis M, Ben Hur S, Shkedy A, et al. Transcriptional programs that control expression of the autoimmune regulator gene Aire. Nat Immunol. 2017;18:161-172 pubmed publisher |
| Uusküla Reimand L, Hou H, Samavarchi Tehrani P, Rudan M, Liang M, Medina Rivera A, et al. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders. Genome Biol. 2016;17:182 pubmed publisher |
- ChIP-Seq; human; loading ...; fig 2a
| Platt J, Salama R, Smythies J, Choudhry H, Davies J, Hughes J, et al. Capture-C reveals preformed chromatin interactions between HIF-binding sites and distant promoters. EMBO Rep. 2016;17:1410-1421 pubmed |
- chromatin immunoprecipitation; human; fig 5
- western blot; human; fig 5h
| Lu F, Chen H, Kossenkov A, DeWispeleare K, Won K, Lieberman P. EBNA2 Drives Formation of New Chromosome Binding Sites and Target Genes for B-Cell Master Regulatory Transcription Factors RBP-jκ and EBF1. PLoS Pathog. 2016;12:e1005339 pubmed publisher |
- western blot; human; fig 1a,b
| Yun J, Song S, Kang J, Park J, Kim H, Han S, et al. Reduced cohesin destabilizes high-level gene amplification by disrupting pre-replication complex bindings in human cancers with chromosomal instability. Nucleic Acids Res. 2016;44:558-72 pubmed publisher |
| Stik G, Vidal E, Barrero M, Cuartero S, Vila Casadesús M, Mendieta Esteban J, et al. CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response. Nat Genet. 2020;52:655-661 pubmed publisher |
| Li Y, Liao Z, Luo H, Benyoucef A, Kang Y, Lai Q, et al. Alteration of CTCF-associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis. Nucleic Acids Res. 2020;48:3119-3133 pubmed publisher |
| Li Y, Haarhuis J, Cacciatore Á, Oldenkamp R, van Ruiten M, Willems L, et al. The structural basis for cohesin-CTCF-anchored loops. Nature. 2020;: pubmed publisher |
| Wang W, Ren G, Hong N, Jin W. Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq. BMC Genomics. 2019;20:1015 pubmed publisher |
| Weiterer S, Meier Soelch J, Georgomanolis T, Mizi A, Beyerlein A, Weiser H, et al. Distinct IL-1α-responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner. EMBO J. 2019;:e101533 pubmed publisher |
| Holzmann J, Politi A, Nagasaka K, Hantsche Grininger M, Walther N, Koch B, et al. Absolute quantification of cohesin, CTCF and their regulators in human cells. elife. 2019;8: pubmed publisher |
| Pan J, McKenzie Z, D Avino A, Mashtalir N, Lareau C, St Pierre R, et al. The ATPase module of mammalian SWI/SNF family complexes mediates subcomplex identity and catalytic activity-independent genomic targeting. Nat Genet. 2019;51:618-626 pubmed publisher |
| Zhang W, Wan H, Feng G, Qu J, Wang J, Jing Y, et al. SIRT6 deficiency results in developmental retardation in cynomolgus monkeys. Nature. 2018;560:661-665 pubmed publisher |
| Jain S, Ba Z, Zhang Y, Dai H, Alt F. CTCF-Binding Elements Mediate Accessibility of RAG Substrates During Chromatin Scanning. Cell. 2018;174:102-116.e14 pubmed publisher |
| Liu N, Hargreaves V, Zhu Q, Kurland J, Hong J, Kim W, et al. Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch. Cell. 2018;173:430-442.e17 pubmed publisher |
| Hall A, Battenhouse A, Shivram H, Morris A, Cowperthwaite M, Shpak M, et al. Bivalent Chromatin Domains in Glioblastoma Reveal a Subtype-Specific Signature of Glioma Stem Cells. Cancer Res. 2018;78:2463-2474 pubmed publisher |
| Schwarzer W, Abdennur N, Goloborodko A, Pekowska A, Fudenberg G, Loe Mie Y, et al. Two independent modes of chromatin organization revealed by cohesin removal. Nature. 2017;551:51-56 pubmed publisher |
| Gallagher M, Posavi M, Huang P, Unger T, Berlyand Y, Gruenewald A, et al. A Dementia-Associated Risk Variant near TMEM106B Alters Chromatin Architecture and Gene Expression. Am J Hum Genet. 2017;101:643-663 pubmed publisher |
| Van Bortle K, Phanstiel D, Snyder M. Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation. Genome Biol. 2017;18:180 pubmed publisher |
| Huang P, Keller C, Giardine B, Grevet J, Davies J, Hughes J, et al. Comparative analysis of three-dimensional chromosomal architecture identifies a novel fetal hemoglobin regulatory element. Genes Dev. 2017;31:1704-1713 pubmed publisher |
| Toth Z, Smindak R, Papp B. Inhibition of the lytic cycle of Kaposi's sarcoma-associated herpesvirus by cohesin factors following de novo infection. Virology. 2017;512:25-33 pubmed publisher |
| Hanssen L, Kassouf M, Oudelaar A, Biggs D, Preece C, Downes D, et al. Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo. Nat Cell Biol. 2017;19:952-961 pubmed publisher |
| MartÃnez RamÃrez I, Del Castillo Falconi V, Mitre Aguilar I, Amador Molina A, Carrillo GarcÃa A, Langley E, et al. SOX2 as a New Regulator of HPV16 Transcription. Viruses. 2017;9: pubmed publisher |
| Jiang Y, Loh Y, Rajarajan P, Hirayama T, Liao W, Kassim B, et al. The methyltransferase SETDB1 regulates a large neuron-specific topological chromatin domain. Nat Genet. 2017;49:1239-1250 pubmed publisher |
| Stolzenburg L, Yang R, Kerschner J, FOSSUM S, Xu M, Hoffmann A, et al. Regulatory dynamics of 11p13 suggest a role for EHF in modifying CF lung disease severity. Nucleic Acids Res. 2017;45:8773-8784 pubmed publisher |
| Shimamoto Y, Tamura S, Masumoto H, Maeshima K. Nucleosome-nucleosome interactions via histone tails and linker DNA regulate nuclear rigidity. Mol Biol Cell. 2017;28:1580-1589 pubmed publisher |
| Rawat P, Jalan M, Sadhu A, Kanaujia A, Srivastava M. Chromatin Domain Organization of the TCRb Locus and Its Perturbation by Ectopic CTCF Binding. Mol Cell Biol. 2017;37: pubmed publisher |
| Skene P, Henikoff S. An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites. elife. 2017;6: pubmed publisher |
| Xiaojun W, Yan L, Hong X, Xianghong Z, Shifeng L, Dingjie X, et al. Acetylated ?-Tubulin Regulated by N-Acetyl-Seryl-Aspartyl-Lysyl-Proline(Ac-SDKP) Exerts the Anti-fibrotic Effect in Rat Lung Fibrosis Induced by Silica. Sci Rep. 2016;6:32257 pubmed publisher |
| Miyazato P, Katsuya H, Fukuda A, Uchiyama Y, Matsuo M, Tokunaga M, et al. Application of targeted enrichment to next-generation sequencing of retroviruses integrated into the host human genome. Sci Rep. 2016;6:28324 pubmed publisher |
| Ayala Ortega E, Arzate MejÃa R, Pérez Molina R, González BuendÃa E, Meier K, Guerrero G, et al. Epigenetic silencing of miR-181c by DNA methylation in glioblastoma cell lines. BMC Cancer. 2016;16:226 pubmed publisher |
| Yang R, Kerschner J, Gosalia N, Neems D, Gorsic L, Safi A, et al. Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus. Nucleic Acids Res. 2016;44:3082-94 pubmed publisher |
| Lake R, Boetefuer E, Won K, Fan H. The CSB chromatin remodeler and CTCF architectural protein cooperate in response to oxidative stress. Nucleic Acids Res. 2016;44:2125-35 pubmed publisher |
