Published Application/Species/Dilution | Reference |
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- chromatin immunoprecipitation; baker's yeast; fig 5a
| Klopf E, Schmidt H, Clauder-Münster S, Steinmetz L, Schüller C. INO80 represses osmostress induced gene expression by resetting promoter proximal nucleosomes. Nucleic Acids Res. 2016;: pubmed publisher
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- western blot; human; fig 3
| Steingruber M, Kraut A, Socher E, Sticht H, Reichel A, Stamminger T, et al. Proteomic Interaction Patterns between Human Cyclins, the Cyclin-Dependent Kinase Ortholog pUL97 and Additional Cytomegalovirus Proteins. Viruses. 2016;8: pubmed publisher
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- western blot; baker's yeast; fig 3c
| Garavís M, González-Polo N, Allepuz-Fuster P, Louro J, Fernández-Tornero C, Calvo O. Sub1 contacts the RNA polymerase II stalk to modulate mRNA synthesis. Nucleic Acids Res. 2016;: pubmed
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- chromatin immunoprecipitation; mouse; fig 1d
| Bailus B, Pyles B, McAlister M, O'Geen H, Lockwood S, Adams A, et al. Protein Delivery of an Artificial Transcription Factor Restores Widespread Ube3a Expression in an Angelman Syndrome Mouse Brain. Mol Ther. 2016;24:548-55 pubmed publisher
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| Rialdi A, Campisi L, Zhao N, Lagda A, Pietzsch C, Ho J, et al. Topoisomerase 1 inhibition suppresses inflammatory genes and protects from death by inflammation. Science. 2016;352:aad7993 pubmed publisher
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- western blot; mouse; fig 2
| Ide S, Déjardin J. End-targeting proteomics of isolated chromatin segments of a mammalian ribosomal RNA gene promoter. Nat Commun. 2015;6:6674 pubmed publisher
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- ChIP-Seq; mouse; fig 2
- immunoprecipitation; mouse; fig s5
| Masuda A, Takeda J, Okuno T, Okamoto T, Ohkawara B, Ito M, et al. Position-specific binding of FUS to nascent RNA regulates mRNA length. Genes Dev. 2015;29:1045-57 pubmed publisher
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- chromatin immunoprecipitation; human
| Stubbs S, Conrad N. Depletion of REF/Aly alters gene expression and reduces RNA polymerase II occupancy. Nucleic Acids Res. 2015;43:504-19 pubmed publisher
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- western blot; human; fig 2
| Liang K, Gao X, Gilmore J, Florens L, Washburn M, Smith E, et al. Characterization of human cyclin-dependent kinase 12 (CDK12) and CDK13 complexes in C-terminal domain phosphorylation, gene transcription, and RNA processing. Mol Cell Biol. 2015;35:928-38 pubmed publisher
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| Mannini L, C Lamaze F, Cucco F, Amato C, Quarantotti V, Rizzo I, et al. Mutant cohesin affects RNA polymerase II regulation in Cornelia de Lange syndrome. Sci Rep. 2015;5:16803 pubmed publisher
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- western blot; baker's yeast
| Gaillard H, Aguilera A. Cleavage factor I links transcription termination to DNA damage response and genome integrity maintenance in Saccharomyces cerevisiae. PLoS Genet. 2014;10:e1004203 pubmed publisher
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| Lodhi N, Kossenkov A, Tulin A. Bookmarking promoters in mitotic chromatin: poly(ADP-ribose)polymerase-1 as an epigenetic mark. Nucleic Acids Res. 2014;42:7028-38 pubmed publisher
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- chromatin immunoprecipitation; human
| Moquet-Torcy G, Tolza C, Piechaczyk M, Jariel-Encontre I. Transcriptional complexity and roles of Fra-1/AP-1 at the uPA/Plau locus in aggressive breast cancer. Nucleic Acids Res. 2014;42:11011-24 pubmed publisher
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- chromatin immunoprecipitation; budding yeasts
- chromatin immunoprecipitation; human
- immunoprecipitation; budding yeasts
| Mirón-García M, Garrido-Godino A, Martínez-Fernández V, Fernández-Pevida A, Cuevas-Bermúdez A, Martín-Expósito M, et al. The yeast prefoldin-like URI-orthologue Bud27 associates with the RSC nucleosome remodeler and modulates transcription. Nucleic Acids Res. 2014;42:9666-76 pubmed publisher
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- western blot; human; fig 2
| Lama L, Seidl C, Ryan K. New insights into the promoterless transcription of DNA coligo templates by RNA polymerase III. Transcription. 2014;5:e27913 pubmed publisher
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- chromatin immunoprecipitation; budding yeasts
| Rosado-Lugo J, Hampsey M. The Ssu72 phosphatase mediates the RNA polymerase II initiation-elongation transition. J Biol Chem. 2014;289:33916-26 pubmed publisher
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- chromatin immunoprecipitation; mouse; 5 ug/time
| Konsavage W, Yochum G. The myc 3' wnt-responsive element suppresses colonic tumorigenesis. Mol Cell Biol. 2014;34:1659-69 pubmed publisher
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- western blot; fission yeast
| Karakasili E, Burkert-Kautzsch C, Kieser A, Sträßer K. Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1. Nucleic Acids Res. 2014;42:10503-15 pubmed publisher
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- chromatin immunoprecipitation; rat
| DiNieri J, Wang X, Szutorisz H, Spano S, Kaur J, CASACCIA P, et al. Maternal cannabis use alters ventral striatal dopamine D2 gene regulation in the offspring. Biol Psychiatry. 2011;70:763-9 pubmed publisher
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- chromatin immunoprecipitation; fission yeast
| DeGennaro C, Alver B, Marguerat S, Stepanova E, Davis C, Bahler J, et al. Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Mol Cell Biol. 2013;33:4779-92 pubmed publisher
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- western blot; human; 1:1,000
| Medina R, Ghule P, Cruzat F, Barutcu A, Montecino M, Stein J, et al. Epigenetic control of cell cycle-dependent histone gene expression is a principal component of the abbreviated pluripotent cell cycle. Mol Cell Biol. 2012;32:3860-71 pubmed publisher
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- chromatin immunoprecipitation; human
| Kuwahara Y, Wei D, Durand J, Weissman B. SNF5 reexpression in malignant rhabdoid tumors regulates transcription of target genes by recruitment of SWI/SNF complexes and RNAPII to the transcription start site of their promoters. Mol Cancer Res. 2013;11:251-60 pubmed publisher
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| Ahn J, Rechsteiner A, Strome S, Kelly W. A Conserved Nuclear Cyclophilin Is Required for Both RNA Polymerase II Elongation and Co-transcriptional Splicing in Caenorhabditis elegans. PLoS Genet. 2016;12:e1006227 pubmed publisher
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| Dias J, Rito T, Torlai Triglia E, Kukalev A, Ferrai C, Chotalia M, et al. Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells. elife. 2015;4: pubmed publisher
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| Mbogning J, Page V, Burston J, Schwenger E, Fisher R, Schwer B, et al. Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification. Nucleic Acids Res. 2015;43:9766-75 pubmed publisher
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| Mas G, de Nadal E, Dechant R, Rodríguez de la Concepción M, Logie C, Jimeno-González S, et al. Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes. EMBO J. 2009;28:326-36 pubmed publisher
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| Lassot I, Estrabaud E, Emiliani S, Benkirane M, Benarous R, Margottin-Goguet F. p300 modulates ATF4 stability and transcriptional activity independently of its acetyltransferase domain. J Biol Chem. 2005;280:41537-45 pubmed
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| Ramamoorthi K, Fropf R, Belfort G, Fitzmaurice H, McKinney R, Neve R, et al. Npas4 regulates a transcriptional program in CA3 required for contextual memory formation. Science. 2011;334:1669-75 pubmed publisher
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| Clark E, Hadjimichael C, Temperley R, Barnard A, Fuller-Pace F, Robson C. p68/DdX5 supports β-catenin & RNAP II during androgen receptor mediated transcription in prostate cancer. PLoS ONE. 2013;8:e54150 pubmed publisher
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