| Published Application/Species/Sample/Dilution | Reference | 
|---|
| immunocytochemistry knockout validation; human; loading ...; fig 5a
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| flow cytometry; human; fig 4a
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| flow cytometry; human; loading ...; fig 4j
 | Brown G, Ca xf1 ete P, Wang H, Medhavy A, Bones J, Roco J, et al . TLR7 gain-of-function genetic variation causes human lupus. Nature. 2022;605:349-356 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1f, s1b
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| flow cytometry; human; 1:100; loading ...; fig 1a
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| flow cytometry; mouse; loading ...; fig 3d
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| flow cytometry; human; 1:200; loading ...; fig 3a
 | Turner J, Kim W, Kalaidina E, Goss C, Rauseo A, Schmitz A, et al . SARS-CoV-2 infection induces long-lived bone marrow plasma cells in humans. Nature. 2021;595:421-425 pubmed  publisher | 
| flow cytometry; human; loading ...
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| flow cytometry; human; loading ...
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| flow cytometry; human; fig s4-1
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| flow cytometry; human; loading ...
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| flow cytometry; human; loading ...; fig 1b
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| flow cytometry; human; loading ...; fig st2
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| flow cytometry; human; loading ...; fig 2a
 | Brouwer P, Caniels T, van der Straten K, Snitselaar J, Aldon Y, Bangaru S, et al . Potent neutralizing antibodies from COVID-19 patients define multiple targets of vulnerability. Science. 2020;369:643-650 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 4a
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| flow cytometry; mouse; 1:500; loading ...; fig s1b
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| flow cytometry; human; loading ...; fig 1d
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| mass cytometry; human; loading ...; fig 1c
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| mass cytometry; human; loading ...; fig 1b, 1d, s2
 | Leylek R, Alcántara Hernández M, Lanzar Z, Lüdtke A, Perez O, Reizis B, et al . Integrated Cross-Species Analysis Identifies a Conserved Transitional Dendritic Cell Population. Cell Rep. 2019;29:3736-3750.e8 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1a
 | Jordan S, Tung N, Casanova Acebes M, Chang C, Cantoni C, Zhang D, et al . Dietary Intake Regulates the Circulating Inflammatory Monocyte Pool. Cell. 2019;178:1102-1114.e17 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a, 1d
 | Staniek J, Lorenzetti R, Heller B, Janowska I, Schneider P, Unger S, et al . TRAIL-R1 and TRAIL-R2 Mediate TRAIL-Dependent Apoptosis in Activated Primary Human B Lymphocytes. Front Immunol. 2019;10:951 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Terahara K, Iwabuchi R, Hosokawa M, Nishikawa Y, Takeyama H, Takahashi Y, et al . A CCR5+ memory subset within HIV-1-infected primary resting CD4+ T cells is permissive for replication-competent, latently infected viruses in vitro. BMC Res Notes. 2019;12:242 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1a
 | Ye Y, Liu M, Tang L, Du F, Liu Y, Hao P, et al . Iguratimod represses B cell terminal differentiation linked with the inhibition of PKC/EGR1 axis. Arthritis Res Ther. 2019;21:92 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s8
 | Pavel Dinu M, Wiebking V, Dejene B, Srifa W, Mantri S, Nicolas C, et al . Gene correction for SCID-X1 in long-term hematopoietic stem cells. Nat Commun. 2019;10:1634 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1
 | Wen Z, Jin K, Shen Y, Yang Z, Li Y, Wu B, et al . N-myristoyltransferase deficiency impairs activation of kinase AMPK and promotes synovial tissue inflammation. Nat Immunol. 2019;20:313-325 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 5a
 | Banki Z, Krabbendam L, Klaver D, Leng T, Kruis S, Mehta H, et al . Antibody opsonization enhances MAIT cell responsiveness to bacteria via a TNF-dependent mechanism. Immunol Cell Biol. 2019;97:538-551 pubmed  publisher | 
| flow cytometry; mouse; loading ...; fig 2d
 | Schlenner S, Pasciuto E, Lagou V, Burton O, Prezzemolo T, Junius S, et al . NFIL3 mutations alter immune homeostasis and sensitise for arthritis pathology. Ann Rheum Dis. 2019;78:342-349 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s3c
 | Wiedemann G, Aithal C, Kraechan A, Heise C, Cadilha B, Zhang J, et al . Microphthalmia-Associated Transcription Factor (MITF) Regulates Immune Cell Migration into Melanoma. Transl Oncol. 2019;12:350-360 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s6d
 | Bradley T, Peppa D, Pedroza Pacheco I, Li D, Cain D, Henao R, et al . RAB11FIP5 Expression and Altered Natural Killer Cell Function Are Associated with Induction of HIV Broadly Neutralizing Antibody Responses. Cell. 2018;175:387-399.e17 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s18b
 | Young M, Mitchell T, Vieira Braga F, Tran M, Stewart B, Ferdinand J, et al . Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors. Science. 2018;361:594-599 pubmed  publisher | 
| flow cytometry; mouse; 1:60; loading ...; fig 7a
 | Kiener R, Fleischmann M, Wiegand M, Lemmermann N, Schwegler C, Kaufmann C, et al . Efficient Delivery of Human Cytomegalovirus T Cell Antigens by Attenuated Sendai Virus Vectors. J Virol. 2018;92: pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1
 | Risnes L, Christophersen A, Dahal Koirala S, Neumann R, Sandve G, Sarna V, et al . Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. J Clin Invest. 2018;128:2642-2650 pubmed  publisher | 
| flow cytometry; mouse; loading ...; fig s13b
 | Panda S, Facchinetti V, Voynova E, Hanabuchi S, Karnell J, Hanna R, et al . Galectin-9 inhibits TLR7-mediated autoimmunity in murine lupus models. J Clin Invest. 2018;128:1873-1887 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 6a
 | Vanshylla K, Bartsch C, Hitzing C, Krümpelmann L, Wienands J, Engels N. Grb2 and GRAP connect the B cell antigen receptor to Erk MAP kinase activation in human B cells. Sci Rep. 2018;8:4244 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 4a
 | Han S, Yang S, Jo H, Oh Y, Park M, Kim J, et al . BAFF and APRIL expression as an autoimmune signature of membranous nephropathy. Oncotarget. 2018;9:3292-3302 pubmed  publisher | 
| flow cytometry; human; fig 1a
 | Kyoizumi S, Kubo Y, Kajimura J, Yoshida K, Hayashi T, Nakachi K, et al . Fate Decision Between Group 3 Innate Lymphoid and Conventional NK Cell Lineages by Notch Signaling in Human Circulating Hematopoietic Progenitors. J Immunol. 2017;199:2777-2793 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s4a
 | Salio M, Gasser O, González López C, Martens A, Veerapen N, Gileadi U, et al . Activation of Human Mucosal-Associated Invariant T Cells Induces CD40L-Dependent Maturation of Monocyte-Derived and Primary Dendritic Cells. J Immunol. 2017;199:2631-2638 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Lunemann S, Martrus G, Goebels H, Kautz T, Langeneckert A, Salzberger W, et al . Hobit expression by a subset of human liver-resident CD56bright Natural Killer cells. Sci Rep. 2017;7:6676 pubmed  publisher | 
| mass cytometry; human; loading ...; fig 1h
 | See P, Dutertre C, Chen J, Günther P, McGovern N, Irac S, et al . Mapping the human DC lineage through the integration of high-dimensional techniques. Science. 2017;356: pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1a
 | Lopes F, Bálint Å, Valvo S, Felce J, Hessel E, Dustin M, et al . Membrane nanoclusters of FcγRI segregate from inhibitory SIRPα upon activation of human macrophages. J Cell Biol. 2017;216:1123-1141 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s3a
 | Aagaard K, Lahon A, Suter M, Arya R, Seferovic M, Vogt M, et al . Primary Human Placental Trophoblasts are Permissive for Zika Virus (ZIKV) Replication. Sci Rep. 2017;7:41389 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1d
 | Wentink M, Dalm V, Lankester A, van Schouwenburg P, Schölvinck L, Kalina T, et al . Genetic defects in PI3K? affect B-cell differentiation and maturation leading to hypogammaglobulineamia and recurrent infections. Clin Immunol. 2017;176:77-86 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Tauriainen J, Scharf L, Frederiksen J, Naji A, Ljunggren H, Sonnerborg A, et al . Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals. Sci Rep. 2017;7:40354 pubmed  publisher | 
| flow cytometry; human; loading ...; tbl 1
 | Sumatoh H, Teng K, Cheng Y, Newell E. Optimization of mass cytometry sample cryopreservation after staining. Cytometry A. 2017;91:48-61 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Serr I, Fürst R, Ott V, Scherm M, Nikolaev A, Gökmen F, et al . miRNA92a targets KLF2 and the phosphatase PTEN signaling to promote human T follicular helper precursors in T1D islet autoimmunity. Proc Natl Acad Sci U S A. 2016;113:E6659-E6668 pubmed | 
| flow cytometry; human; fig 1c
 | Chung B, Guevel B, Reynolds G, Gupta Udatha D, Henriksen E, Stamataki Z, et al . Phenotyping and auto-antibody production by liver-infiltrating B cells in primary sclerosing cholangitis and primary biliary cholangitis. J Autoimmun. 2017;77:45-54 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 2a
 | Massaad M, Zhou J, Tsuchimoto D, Chou J, Jabara H, Janssen E, et al . Deficiency of base excision repair enzyme NEIL3 drives increased predisposition to autoimmunity. J Clin Invest. 2016;126:4219-4236 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Wahid R, Fresnay S, Levine M, Sztein M. Cross-reactive multifunctional CD4+ T cell responses against Salmonella enterica serovars Typhi, Paratyphi A and Paratyphi B in humans following immunization with live oral typhoid vaccine Ty21a. Clin Immunol. 2016;173:87-95 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1
 | Kelly A, Robinson M, Roche G, Biron C, O Farrelly C, Ryan E. Immune Cell Profiling of IFN-? Response Shows pDCs Express Highest Level of IFN-?R1 and Are Directly Responsive via the JAK-STAT Pathway. J Interferon Cytokine Res. 2016;36:671-680 pubmed | 
| flow cytometry; human; loading ...; fig s6a
 | Landtwing V, Raykova A, Pezzino G, Beziat V, Marcenaro E, Graf C, et al . Cognate HLA absence in trans diminishes human NK cell education. J Clin Invest. 2016;126:3772-3782 pubmed  publisher | 
| flow cytometry; human; fig 1
 | Mercer F, Diala F, Chen Y, Molgora B, Ng S, Johnson P. Leukocyte Lysis and Cytokine Induction by the Human Sexually Transmitted Parasite Trichomonas vaginalis. PLoS Negl Trop Dis. 2016;10:e0004913 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Demers K, Makedonas G, Buggert M, Eller M, Ratcliffe S, Goonetilleke N, et al . Temporal Dynamics of CD8+ T Cell Effector Responses during Primary HIV Infection. PLoS Pathog. 2016;12:e1005805 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Cerny D, Thi Le D, The T, Zuest R, Kg S, Velumani S, et al . Complete human CD1a deficiency on Langerhans cells due to a rare point mutation in the coding sequence. J Allergy Clin Immunol. 2016;138:1709-1712.e11 pubmed  publisher | 
|  | Sullivan K, Lewis H, Hill A, Pandey A, Jackson L, Cabral J, et al . Trisomy 21 consistently activates the interferon response. elife. 2016;5: pubmed  publisher | 
| flow cytometry; human; fig 6a
 | Wittmann A, Lamprinaki D, Bowles K, Katzenellenbogen E, Knirel Y, Whitfield C, et al . Dectin-2 Recognizes Mannosylated O-antigens of Human Opportunistic Pathogens and Augments Lipopolysaccharide Activation of Myeloid Cells. J Biol Chem. 2016;291:17629-38 pubmed  publisher | 
| flow cytometry; human; fig s5b
 | Cheng W, van Asten S, Burns L, Evans H, Walter G, Hashim A, et al . Periodontitis-associated pathogens P. gingivalis and A. actinomycetemcomitans activate human CD14(+) monocytes leading to enhanced Th17/IL-17 responses. Eur J Immunol. 2016;46:2211-21 pubmed  publisher | 
| mass cytometry; human; loading ...; tbl 1, 2
 | Kay A, Strauss Albee D, Blish C. Application of Mass Cytometry (CyTOF) for Functional and Phenotypic Analysis of Natural Killer Cells. Methods Mol Biol. 2016;1441:13-26 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Bal S, Bernink J, Nagasawa M, Groot J, Shikhagaie M, Golebski K, et al . IL-1?, IL-4 and IL-12 control the fate of group 2 innate lymphoid cells in human airway inflammation in the lungs. Nat Immunol. 2016;17:636-45 pubmed  publisher | 
| flow cytometry; mouse; loading ...; fig 6b
 | Jackson S, Jacobs H, Arkatkar T, Dam E, Scharping N, Kolhatkar N, et al . B cell IFN-γ receptor signaling promotes autoimmune germinal centers via cell-intrinsic induction of BCL-6. J Exp Med. 2016;213:733-50 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1b
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| flow cytometry; human; loading ...; fig 1d
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| flow cytometry; human; fig 1
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| flow cytometry; mouse; 1:100
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| flow cytometry; human; fig 5
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| flow cytometry; human; 1:200
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| flow cytometry; human; fig 5
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| flow cytometry; human; fig 1
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| flow cytometry; human; fig 1
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