| Published Application/Species/Sample/Dilution | Reference | 
|---|
| flow cytometry; human; 1:100; loading ...; fig 7c
 | Beider K, Voevoda Dimenshtein V, Zoabi A, Rosenberg E, Magen H, Ostrovsky O, et al . CXCL13 chemokine is a novel player in multiple myeloma osteolytic microenvironment, M2 macrophage polarization, and tumor progression. J Hematol Oncol. 2022;15:144 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Amaral E, Foreman T, Namasivayam S, Hilligan K, Kauffman K, Barbosa Bomfim C, et al . GPX4 regulates cellular necrosis and host resistance in Mycobacterium tuberculosis infection. J Exp Med. 2022;219: pubmed  publisher | 
|  | Chiou S, Tseng D, Reuben A, Mallajosyula V, Molina I, Conley S, et al . Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery. Immunity. 2021;54:586-602.e8 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 3s2a
 | Gregorova M, Morse D, Brignoli T, Steventon J, Hamilton F, Albur M, et al . Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia. elife. 2020;9: pubmed  publisher | 
|  | Neidleman J, Luo X, Frouard J, Xie G, Hsiao F, Ma T, et al . Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir. elife. 2020;9: pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1b
 | Martin E, Minet N, Boschat A, Sanquer S, Sobrino S, Lenoir C, et al . Impaired lymphocyte function and differentiation in CTPS1-deficient patients result from a hypomorphic homozygous mutation. JCI Insight. 2020;5: pubmed  publisher | 
| flow cytometry; human; loading ...; fig 4a
 | Muhammad F, Wang D, Montieth A, Lee S, Preble J, Foster C, et al . PD-1+ melanocortin receptor dependent-Treg cells prevent autoimmune disease. Sci Rep. 2019;9:16941 pubmed  publisher | 
| flow cytometry; human; loading ...; fig ex2a
 | Barkal A, Brewer R, Markovic M, Kowarsky M, Barkal S, Zaro B, et al . CD24 signalling through macrophage Siglec-10 is a target for cancer immunotherapy. Nature. 2019;572:392-396 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 3a
 | Allden S, Ogger P, Ghai P, McErlean P, Hewitt R, Toshner R, et al . The Transferrin Receptor CD71 Delineates Functionally Distinct Airway Macrophage Subsets during Idiopathic Pulmonary Fibrosis. Am J Respir Crit Care Med. 2019;: pubmed  publisher | 
| mass cytometry; human; loading ...; fig s1
 | Fernandez I, Baxter R, Garcia Perez J, Vendrame E, Ranganath T, Kong D, et al . A novel human IL2RB mutation results in T and NK cell-driven immune dysregulation. J Exp Med. 2019;216:1255-1267 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1b
 | Zhang J, Supakorndej T, Krambs J, Rao M, Abou Ezzi G, Ye R, et al . Bone marrow dendritic cells regulate hematopoietic stem/progenitor cell trafficking. J Clin Invest. 2019;129:2920-2931 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 5
 | Oda H, Beck D, Kuehn H, Sampaio Moura N, Hoffmann P, Ibarra M, et al . Second Case of HOIP Deficiency Expands Clinical Features and Defines Inflammatory Transcriptome Regulated by LUBAC. Front Immunol. 2019;10:479 pubmed  publisher | 
| flow cytometry; human; 1:200; loading ...; fig 1b
 | Jones G, Bain C, Fenton T, Kelly A, Brown S, Ivens A, et al . Dynamics of Colon Monocyte and Macrophage Activation During Colitis. Front Immunol. 2018;9:2764 pubmed  publisher | 
| flow cytometry; rhesus macaque; loading ...; fig 2d
 | Chea L, Wyatt L, Gangadhara S, Moss B, Amara R. Novel Modified Vaccinia Virus Ankara Vector Expressing Anti-apoptotic Gene B13R Delays Apoptosis and Enhances Humoral Responses. J Virol. 2019;93: pubmed  publisher | 
| flow cytometry; human; 1:100; loading ...; fig 1j
 | Mouhadeb O, Ben Shlomo S, Cohen K, Farkash I, Gruber S, Maharshak N, et al . Impaired COMMD10-Mediated Regulation of Ly6Chi Monocyte-Driven Inflammation Disrupts Gut Barrier Function. Front Immunol. 2018;9:2623 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1
 | Risnes L, Christophersen A, Dahal Koirala S, Neumann R, Sandve G, Sarna V, et al . Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. J Clin Invest. 2018;128:2642-2650 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 2c
 | Clayton K, Collins D, Lengieza J, Ghebremichael M, Dotiwala F, Lieberman J, et al . Resistance of HIV-infected macrophages to CD8+ T lymphocyte-mediated killing drives activation of the immune system. Nat Immunol. 2018;19:475-486 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s1
 | Melo Gonzalez F, Fenton T, Forss C, Smedley C, Goenka A, MacDonald A, et al . Intestinal mucin activates human dendritic cells and IL-8 production in a glycan-specific manner. J Biol Chem. 2018;293:8543-8553 pubmed  publisher | 
| flow cytometry; African green monkey; loading ...; fig 2a
 | Holbrook B, Aycock S, Machiele E, Clemens E, Gries D, Jorgensen M, et al . An R848 adjuvanted influenza vaccine promotes early activation of B cells in the draining lymph nodes of non-human primate neonates. Immunology. 2018;153:357-367 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s4a
 | Salio M, Gasser O, González López C, Martens A, Veerapen N, Gileadi U, et al . Activation of Human Mucosal-Associated Invariant T Cells Induces CD40L-Dependent Maturation of Monocyte-Derived and Primary Dendritic Cells. J Immunol. 2017;199:2631-2638 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Bergström I, Lundberg A, Jonsson S, Särndahl E, Ernerudh J, Jonasson L. Annexin A1 in blood mononuclear cells from patients with coronary artery disease: Its association with inflammatory status and glucocorticoid sensitivity. PLoS ONE. 2017;12:e0174177 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Tauriainen J, Scharf L, Frederiksen J, Naji A, Ljunggren H, Sonnerborg A, et al . Perturbed CD8+ T cell TIGIT/CD226/PVR axis despite early initiation of antiretroviral treatment in HIV infected individuals. Sci Rep. 2017;7:40354 pubmed  publisher | 
| flow cytometry; rhesus macaque; loading ...
 | Roberts E, Carnathan D, Li H, Shaw G, Silvestri G, Betts M. Collapse of Cytolytic Potential in SIV-Specific CD8+ T Cells Following Acute SIV Infection in Rhesus Macaques. PLoS Pathog. 2016;12:e1006135 pubmed  publisher | 
| flow cytometry; mouse; loading ...; fig s4
 | Cheng L, Ma J, Li J, Li D, Li G, Li F, et al . Blocking type I interferon signaling enhances T cell recovery and reduces HIV-1 reservoirs. J Clin Invest. 2017;127:269-279 pubmed  publisher | 
| flow cytometry; human; loading ...; fig s4
 | Andresen V, Erikstein B, Mukherjee H, Sulen A, Popa M, S rnes S, et al . Anti-proliferative activity of the NPM1 interacting natural product avrainvillamide in acute myeloid leukemia. Cell Death Dis. 2016;7:e2497 pubmed  publisher | 
| flow cytometry; human; loading ...
 | Demers K, Makedonas G, Buggert M, Eller M, Ratcliffe S, Goonetilleke N, et al . Temporal Dynamics of CD8+ T Cell Effector Responses during Primary HIV Infection. PLoS Pathog. 2016;12:e1005805 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1a
 | Gadd V, Patel P, Jose S, Horsfall L, Powell E, Irvine K. Altered Peripheral Blood Monocyte Phenotype and Function in Chronic Liver Disease: Implications for Hepatic Recruitment and Systemic Inflammation. PLoS ONE. 2016;11:e0157771 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1b
 | Malkiel S, Jeganathan V, Wolfson S, Manjarrez Orduno N, Marasco E, Aranow C, et al . Checkpoints for Autoreactive B Cells in the Peripheral Blood of Lupus Patients Assessed by Flow Cytometry. Arthritis Rheumatol. 2016;68:2210-20 pubmed  publisher | 
| flow cytometry; human; fig 2
 | Offersen R, Nissen S, Rasmussen T, Østergaard L, Denton P, Søgaard O, et al . A Novel Toll-Like Receptor 9 Agonist, MGN1703, Enhances HIV-1 Transcription and NK Cell-Mediated Inhibition of HIV-1-Infected Autologous CD4+ T Cells. J Virol. 2016;90:4441-4453 pubmed  publisher | 
|  | Amos J, Himes J, Armand L, Gurley T, Martinez D, Colvin L, et al . Rapid Development of gp120-Focused Neutralizing B Cell Responses during Acute Simian Immunodeficiency Virus Infection of African Green Monkeys. J Virol. 2015;89:9485-98 pubmed  publisher | 
| flow cytometry; human; fig s5
 | O Brien E, Abdulahad W, Rutgers A, Huitema M, O Reilly V, Coughlan A, et al . Intermediate monocytes in ANCA vasculitis: increased surface expression of ANCA autoantigens and IL-1β secretion in response to anti-MPO antibodies. Sci Rep. 2015;5:11888 pubmed  publisher | 
| flow cytometry; human; fig 1
 | Boyle M, Jagannathan P, Bowen K, McIntyre T, Vance H, Farrington L, et al . Effector Phenotype of Plasmodium falciparum-Specific CD4+ T Cells Is Influenced by Both Age and Transmission Intensity in Naturally Exposed Populations. J Infect Dis. 2015;212:416-25 pubmed  publisher | 
|  | Heninger A, Wentrup S, Al Saeedi M, Schiessling S, Giese T, Wartha F, et al . Immunomodulation of human intestinal T cells by the synthetic CD80 antagonist RhuDex®. Immun Inflamm Dis. 2014;2:166-80 pubmed  publisher | 
| flow cytometry; rhesus macaque
 | Li H, Evans T, Gillis J, Connole M, Reeves R. Bone marrow-imprinted gut-homing of plasmacytoid dendritic cells (pDCs) in acute simian immunodeficiency virus infection results in massive accumulation of hyperfunctional CD4+ pDCs in the mucosae. J Infect Dis. 2015;211:1717-25 pubmed  publisher | 
|  | Tungatt K, Bianchi V, Crowther M, Powell W, Schauenburg A, Trimby A, et al . Antibody stabilization of peptide-MHC multimers reveals functional T cells bearing extremely low-affinity TCRs. J Immunol. 2015;194:463-74 pubmed  publisher | 
| flow cytometry; human; loading ...; fig 1
 | Duggal N, Beswetherick A, Upton J, Hampson P, Phillips A, Lord J. Depressive symptoms in hip fracture patients are associated with reduced monocyte superoxide production. Exp Gerontol. 2014;54:27-34 pubmed  publisher | 
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