This webpage contains legacy information. The product is either no longer available from the supplier or has been delisted at Labome.
product summary
company name :
Addgene
product type :
cDNA
product name :
pFETCh_HMG20A
catalog :
86271
citations: 1
Reference
Savic D, Partridge E, Newberry K, Smith S, Meadows S, Roberts B, et al. CETCh-seq: CRISPR epitope tagging ChIP-seq of DNA-binding proteins. Genome Res. 2015;25:1581-9 pubmed publisher
product information
Catalog Number :
86271
Product Name :
pFETCh_HMG20A
article :
doi10.1101/gr.193540.115
id15802
pubmed_id26355004
bacterial resistance :
Kanamycin
cloning :
backbonepFETCh_Donor
backbone_mutation
backbone_origin
backbone_size
promoter
sequencing_primer_3
sequencing_primer_5
vector_types
CRISPR
growth notes :
This plasmid was co-transfected along with PX458_HMG20A_1 and PX458_HMG20A_2 into HepG2 cells, and genomic editing was verified by PCR. The donor nucleotide sequence in the final codon of the HMG20A gene is modified to discourage sgRNA recognition, while retaining the native amino acid sequence. We performed ChIP-seq on this cell line using anti-FLAG Sigma F1804 and obtained data that passed our quality tests. Immunoprecipitation with anti-FLAG Sigma F1804 followed by mass spectrometry identified HMG20A. All released data, including ChIP-seq files and validation data, are available at the ENCODE web portal: https://www.encodeproject.org/search/?searchTerm=flag&type=Experiment&lab.title=Richard+Myers%2C+HAIB . Note: This plasmid is part of the Mendenhall and Meyers CRISPR-based Tagging system to add a tag (currently using FLAG) to endogenous proteins. Please see https://www.addgene.org/crispr/tagging/ for more details.
growth strain :
Donor vector for 3' FLAG tag of human HMG20A
origin :
37
pi :
alt_names
cloning
clone_methodGibson Cloning
cloning_site_3
cloning_site_5
promoter
sequencing_primer_3aactgttgggaagggcgatc
sequencing_primer_5acgcctgtgaaaccgtacta
site_3_destroyed
site_5_destroyed
entrez_gene
aliasesHMGX1, HMGXB1
geneHMG20A
id10363
genbank_ids
mutation
nameHMG20A homology arms
shRNA_sequence
size
species
9606
Homo sapiens
tags
locationC terminal on insert
tag3XFLAG-P2A-NeoR
resistance markers :
1728
2438
tags :
High Copy
company information
Addgene
490 Arsenal Way, Suite 100
Watertown, MA 02472
info@addgene.org
https://www.addgene.org
617.225.9000
headquarters: USA