P53 antibody | knockout validation | Cell Signaling 2524

This is a knockout-validated antibody summary, based on the publications "Cancer-Specific Loss of p53 Leads to a Modulation of Myeloid and T Cell Responses" for western blot knockout validation (figure s1a) [6], "Stabilization of p21 by mTORC1/4E-BP1 predicts clinical outcome of head and neck cancers" (western blot knockout validation, see figure 1C in the article) [7], The p53R172H mutant does not enhance hepatocellular carcinoma development and progression" [1], "The MDM2-p53-pyruvate carboxylase signalling axis couples mitochondrial metabolism to glucose-stimulated insulin secretion in pancreatic β-cells" [2], "The tumour suppressor CYLD regulates the p53 DNA damage response" [3], "Tracking and transforming neocortical progenitors by CRISPR/Cas9 gene targeting and piggyBac transposase lineage labeling" [8], "Creation and preliminary characterization of a Tp53 knockout rat" [4], "An inducible long noncoding RNA amplifies DNA damage signaling" [9] (see figure 1d in the article), "Targeted Deletion of p53 in the Proximal Tubule Prevents Ischemic Renal Injury" [5], "Genome-wide CRISPR screen identifies ELP5 as a determinant of gemcitabine sensitivity in gallbladder cancer" for western blot knockout validation (see figure 5h [10] ), "Rapid interrogation of cancer cell of origin through CRISPR editing" for (figure 2a, 5b,5d) [11], and "Tumor genotype dictates radiosensitization after Atm deletion in primary brainstem glioma models" for western blot knockout validation (figure s3) [12]. Labome curates formal publications to compile a list of antibodies with unambiguous specificity within Validated Antibody Database (VAD).

Company

Cell Signaling

Antibody: Mouse monoclonal p53

Catalogue No: 2524

Clone: 1C12

Summary: Mouse monoclonal antibody raised against a synthetic peptide corresponding to residues surrounding Ser20 of human p53.

Supplier recommended for WB, IP, IF, flow cytometry and ChIP.

Reacts with human, mouse, rat, hamster and monkey p53.

P53 antibody | knockout validation | Cell Signaling 2524 figure 1
Figure 1. Expression of p53 in p53 flox/flox and p53 mutant mice tumor cell line. From [1].
Article "The p53R172H mutant does not enhance hepatocellular carcinoma development and progression"
Experimental design

Technique: WB (Figure 1).

Sample: tumor cell line

Dilution :1:2000

Summary

This antibody was validated in p53 flox/flox mice by immunoblotting [1]. P53 expression in the cell line derived from of p53 flox/flox mice was not detected by western blot.

P53 antibody | knockout validation | Cell Signaling 2524 figure 2
Figure 2. Western blot of isolated pancreatic islets from WT, MDM2 knockout (KO) and MDM2/p53 double knockout (DKO) mice. Probed with anti-p53 antibody (middle row). Actin serves as a loading control. From [2].
Article "The MDM2-p53-pyruvate carboxylase signalling axis couples mitochondrial metabolism to glucose-stimulated insulin secretion in pancreatic β-cells"
Validation Method

Western blot (Figure 2).

Sample

Isolated pancreatic islets from wild-type and knockout mice.

Primary incubation

dilution is 1:1000.

P53 antibody | knockout validation | Cell Signaling 2524 figure 3
Figure 3. Immunoblot analysis of p53 and tubulin (loading control) in camptothecin (CpT)-treated intestinal epithelial organoids prepared from the indicated mouse lines. From [3].
Article "The tumour suppressor CYLD regulates the p53 DNA damage response"
Validation Method

Western blot (Figure 3)

Sample

Intestinal epithelial organoids obtained from CYLDΔ932FL, CYLDΔ932IEC, and p53IEC-KO mice.

Primary incubation

1:750 dilution at 4° O/N.

Secondary incubation

Horseradish peroxidase-coupled antibodies (GE Healthcare and Jackson Immune Research).

Detection

Chemiluminescent detection substrate (GE Healthcare and Thermo Scientific).

Article "Tracking and transforming neocortical progenitors by CRISPR/Cas9 gene targeting and piggyBac transposase lineage labeling"
Validation Method

Immunohistochemistry

Sample

Control and CRISPR/Cas9 targeting P53 Wistar rats brains. Animals were perfused transcardially with 4% paraformaldehyde/PBS (4% PFA) and brain samples were post-fixed overnight in 4% PFA. Brains were sectioned at 65 µm thickness on a vibratome (Leica VT 1000S) and processed as free-floating sections.

Primary incubation

1:50 dilution.

Detection

Zeiss Axio imager M2 microscope with Apotome with 488/546/350 nm filter cubes and the X-Cite series 120Q light source.

Figure

Please see Suppl. Figure 1f,g in the article [8].

P53 antibody | knockout validation | Cell Signaling 2524 figure 4
Figure 4. Western blot of primary cultured tail cells from both wild-type (WT) and Tp53Δ11/Δ11 (−/−) rats. Actin was used as loading control. From [4].
Article "Creation and preliminary characterization of a Tp53 knockout rat"
Validation Method

Western blot (Figure 4).

Sample

Primary cultured tail cells from both wild-type (WT) and Tp53Δ11/Δ11 (−/−) rats. Cells were lysed in RIPA buffer (Sigma) containing 1× Protease Inhibitor Cocktail (Sigma).

Blocking agent

5% milk for 30 minutes.

Primary incubation

1:500 dilution in 5% milk solution for 1 hour.

Secondary incubation

1:10,000 dilution goat anti-mouse (Jackson ImmunoResearch, West Grove, PA) for 30 minutes.

Detection

Supersignal West Pico substrate (Thermo Scientific, Waltham, MA) for 2 minutes and visualized on a ChemiDoc XRS+ (Bio-Rad).

P53 antibody | knockout validation | Cell Signaling 2524 figure 5
Figure 5. Western blot analysis showing expression levels of p53 at 24 hours (1 d) after in sham and ischemic renal injury-induced kidneys of WT and p53-KO mice. GAPDH was used as loading control. From [5].
Article "Targeted Deletion of p53 in the Proximal Tubule Prevents Ischemic Renal Injury"
Validation Method

Western blot (Figure 5).

Sample

Whole-renal tissue extracts from control and kidney proximal tubule-specific p53-KO mice.

Primary incubation

Overnight at 4°C.

Secondary incubation

Horseradish peroxidase-conjugated secondary antibodies (1:5,000; Vector Laboratories).

Detection

Western Lighting Plus-ECL (NEL104001EA; PerkinElmer, Waltham, MA), and x-ray film.

References
  1. Ahronian L, Driscoll D, Klimstra D, Lewis B. The p53R172H mutant does not enhance hepatocellular carcinoma development and progression. PLoS ONE. 2015;10:e0123816 pubmed publisher
  2. Li X, Cheng K, Liu Z, Yang J, Wang B, Jiang X, et al. The MDM2-p53-pyruvate carboxylase signalling axis couples mitochondrial metabolism to glucose-stimulated insulin secretion in pancreatic β-cells. Nat Commun. 2016;7:11740 pubmed publisher
  3. Fern ndez Majada V, Welz P, Ermolaeva M, Schell M, Adam A, Dietlein F, et al. The tumour suppressor CYLD regulates the p53 DNA damage response. Nat Commun. 2016;7:12508 pubmed publisher
  4. McCoy A, Besch Williford C, Franklin C, Weinstein E, Cui X. Creation and preliminary characterization of a Tp53 knockout rat. Dis Model Mech. 2013;6:269-78 pubmed publisher
  5. Ying Y, Kim J, Westphal S, Long K, Padanilam B. Targeted deletion of p53 in the proximal tubule prevents ischemic renal injury. J Am Soc Nephrol. 2014;25:2707-16 pubmed publisher
  6. Blagih J, Zani F, Chakravarty P, Hennequart M, Pilley S, Hobor S, et al. Cancer-Specific Loss of p53 Leads to a Modulation of Myeloid and T Cell Responses. Cell Rep. 2020;30:481-496.e6 pubmed publisher
  7. Llanos S, García Pedrero J, Morgado Palacin L, Rodrigo J, Serrano M. Stabilization of p21 by mTORC1/4E-BP1 predicts clinical outcome of head and neck cancers. Nat Commun. 2016;7:10438 pubmed publisher
  8. Chen F, Rosiene J, Che A, Becker A, LoTurco J. Tracking and transforming neocortical progenitors by CRISPR/Cas9 gene targeting and piggyBac transposase lineage labeling. Development. 2015;142:3601-11 pubmed publisher
  9. Schmitt A, Garcia J, Hung T, Flynn R, Shen Y, Qu K, et al. An inducible long noncoding RNA amplifies DNA damage signaling. Nat Genet. 2016;48:1370-1376 pubmed publisher
  10. Xu S, Zhan M, Jiang C, He M, Yang L, Shen H, et al. Genome-wide CRISPR screen identifies ELP5 as a determinant of gemcitabine sensitivity in gallbladder cancer. Nat Commun. 2019;10:5492 pubmed publisher
  11. Feng W, Cao Z, Lim P, Zhao H, Luo H, Mao N, et al. Rapid interrogation of cancer cell of origin through CRISPR editing. Proc Natl Acad Sci U S A. 2021;118: pubmed publisher
  12. Deland K, Starr B, Mercer J, Byemerwa J, Crabtree D, Williams N, et al. Tumor genotype dictates radiosensitization after Atm deletion in primary brainstem glioma models. J Clin Invest. 2021;131: pubmed publisher